Computer Aided Medical Procedures (CAMP) - IN2021
Lecture by Prof. Dr. Nassir Navab & invited speakers.
4+0 SWS
6 ECTS
Praktische Informatik
Vertiefungsfach
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Attention:
- Please fill in this as soon as possible. Your registration is not binding but enables us to send you information about changes in schedule in the future.
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Further Information:
- The classes and exam are in English.
- This lecture is going to be succeeded by "Computer Aided Medical Procedures II" (2+2 SWS, 5 ECTS) in the next summer term (which is recommended but not obligatory).
- In case of organizational questions, please contact Andreas Keil.
Time & Location:
Exam:
- Date: Thursday, February 8, 2007, 14:30-16:00, MI 03.13.010
- Type: written, closed book (no material), approx. 90min
- Grading of the exam:
- approx. 80% for detailed questions and problems to solve on the CAMP lectures (type "C" in the course schedule below)
- approx. 20% for more general questions on invited talks and field trips (types "I" and "F" in the course schedule below)
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Abstract
Computer science is playing an important, increasing role in medical practices. Medical imaging companies are no more asked by physicians to only produce images of anatomy. Instead, they are asked to design software and hardware systems to provide complex computer-aided solutions for diagnosis, intervention and therapy. There are more and more opportunities for computer science graduates to contribute to the development and deployment of medical solutions. Within the operating rooms, there is an increasing need for the integration and visualization of heterogeneous data acquired by numerous sensors.
This course on computer aided medical procedures exposes the students to the challenges of building the operating rooms of the future. The main focus of the course is in imaging technologies especially intra-operative imaging as well as the visualization of this data. Techniques like segmentation and registration will be explained in various classes.
There will be invited guests from the hospital Rechts der Isar and also medical companies in the Thursday classes. They will talk about the physical properties and the clinical use of the different modalitries and techniques. The invited guests will be announced in the course schedule below.
For a more detailed overview, see
last year's lecture.
Prerequisites
- Interest in medical image processing
Benefits
- Knowledge in medical image acquisition / image modalities
- Deep insight into medical image computing
Course Schedule
| Date | Type | Topic | Conducted by | Material |
| Tue, Oct 17, 2006 | | Introduction / History of Radiology | Prof. Dr. N. Navab | Slides, Slides |
| Thu, Oct 19, 2006 | C | Image Processing and Segmentation 1 | A. Keil and Prof. Dr. N. Navab | Slides |
| Tue, Oct 24, 2006 | C | Image Processing and Segmentation 2 | A. Keil and Prof. Dr. N. Navab | |
| Thu, Oct 26, 2006 | C | Image Processing and Segmentation 3 | A. Keil and Prof. Dr. N. Navab | |
| Tue, Oct 31, 2006 | C | Computer-Aided Surgery and Exemplary Applications | J. Traub and Prof. Dr. N. Navab | Slides |
| Thu, Nov 2, 2006 | F | Field Trip to Siemens Medical | | |
| Tue, Nov 7, 2006 | I | Physical Properties of Radiation with Applications in X-Ray and Radiation Therapy | Prof. Dr. P. Kneschaurek | Slides, Slides (incl. videos) |
| Thu, Nov 9, 2006 | C | Basics of Transformations | Prof. Dr. N. Navab | Slides |
| Tue, Nov 14, 2006 | C | Registration 1 | Prof. Dr. N. Navab | Slides |
| Thu, Nov 16, 2006 | I | Cone-Beam Reconstruction | Dr. G. Lauritsch | Slides |
| Tue, Nov 21, 2006 | C | Registration 2 | M. Groher and Prof. Dr. N. Navab | |
| Thu, Nov 23, 2006 | I | Magnetic Resonance Imaging - Basics and Applications | Dr. S. Nekolla | Slides |
| Tue, Nov 28, 2006 | C | Solution Demos on Segmentation and Registration Introduction to Deformable Registration | O. Kutter, M. Groher, A. Keil, D. Zikic, and Prof. Dr. N. Navab | |
| Thu, Nov 30, 2006 | I | Advanced MRI | Prof. Dr. R. Botnar | Slides |
| Tue, Dec 5, 2006 | I | Ultrasound Imaging | M. Schreckenberg | Slides |
| Thu, Dec 7, 2006 | | no class due to Dies Academicus | | |
| Tue, Dec 12, 2006 | C | Surgical Workflow | T. Sielhorst and Prof. Dr. N. Navab | Slides |
| Thu, Dec 14, 2006 | I | 3D/2D Registration for Image Guided Therapy | Prof. Dr. F. Pernuš | Slides |
| Tue, Dec 19, 2006 | I | Nuclear Medicine (PET/SPECT) | Dr. M.-J. Martinez | Slides |
| Thu, Dec 21, 2006 | C | Statistical Data Analysis for Computer-Aided Diagnosis | M. L. Mueller and Prof. Dr. N. Navab | Slides |
| Tue, Dec 26, 2006 | | no class due to Christmas holidays | | |
| Thu, Dec 28, 2006 | | no class due to Christmas holidays | | |
| Tue, Jan 2, 2007 | | no class due to Christmas holidays | | |
| Thu, Jan 4, 2007 | | no class due to Christmas holidays | | |
| Tue, Jan 9, 2007 | C | Basics of Tracking Technologies | J. Traub and Prof. Dr. N. Navab | Slides |
| Thu, Jan 11, 2007 | C | Device Calibration, Camera Calibration and Hand-Eye Calibration | M. Feuerstein and Prof. Dr. N. Navab | Slides, Slides (incl. videos) |
| Tue, Jan 16, 2007 | I | Registration-Free Navigation for Surgery | Prof. Dr. E. Euler | Slides, Slides (incl. videos) |
| Thu, Jan 18, 2007 | | canceled due to Kyrill storm | | |
| Tue, Jan 23, 2007 | C | Medical Augmented Reality - Definition and State of Art | Prof. Dr. N. Navab | Slides |
| Thu, Jan 25, 2007 | I | Simulation materialabtragender chirurgischer Eingriffe | Prof. Dr. K. H. Höhne | Slides |
| Tue, Jan 30, 2007 | I | Virtual and Augmented Reality Based Simlation for Surgical Skill Training Presentation of the Chair's Research and Next Term's Seminars | Gábor Székely | Slides |
| Thu, Feb 1, 2007 | F | Field Trip to BrainLAB | | |
| Tue, Feb 6, 2007 | C | Visualization and Medical Augmented Reality Presentation of the Chair's Research and Next Term's Seminars | C. Bichlmeier and Prof. Dr. N. Navab | Slides |
| Thu, Feb 8, 2007 | | Exam in room MI 03.13.010 | | |
Field Trips
Siemens Medical, Thursday, Nov. 2, 2006
There was a one day field trip to Siemens Medical in Forchheim and Erlangen on Thu, Nov. 2, 2006. We had a day full of talks and demos on CT, X ray systems, MRI, and special applications.
If you did not attend the field trip, you should try to get some knowledge on imaging modalities using the literature provided below.
Schedule:
- 06:45: Meeting point at the Garching parking lot
- 07:00-09:00: Transfer to Siemens CT/AX, Siemensstr. 1, Forchheim
- 09:15-10:45: Visit of CT (Computed Tomography), Dr. R. Raupach and Dr. M. Scheuering
- CT physics, reconstruction and applications
- Visit of the final assembly and testing bays
- 10:50-12:15: Visit of AX (Angiography / X-Ray), Dr. J. Böse
- Angio/X-ray systems
- Demonstration of angio/X-ray systems
- Visit of the assembly and testing bays
- 12:20-13:00: Lunch break in Forchheim (sponsored by AX)
- 13:05-13:45: Transfer to Siemens MR/SP, Allee am Röthelheimpark 2, Erlangen
- 14:00-15:15: Visit of SP (Special Products), Dr. R. Graumann, Dr. Mertelmeier
- 15:20-17:15: Visit of MR (Magnetic Resonance Imaging), Dr. S. Thesen and Dr. H. Meyer
- Physics and applications of MR
- Visit of the production line
- Demo of a (regular and functional) MR session
- 17:30-19:30 Return to Garching
BrainLAB, Thursday, Feb. 1, 2007
There was a half-day field trip to BrainLAB, Kapellenstr. 12, 85622 Feldkirchen on Thursday, Feb. 1, 2007.
Schedule:
- 12:30-12:45: Transfer from Garching (library) to BrainLAB
- 13:00-13:45: Facility Tour / Corporate introduction, William Fiuza
- 13:45-14:15:
- 1st group: BrainSUITE / IORS, Bryan McGuinn
- 2nd group: Oncology, Christine Seidler
- 14:15-15:15:
- 1st group: Product demo Spine & Trauma, Martin Ringholz
- 2nd group: Product demo Spine & Trauma, Alan Philips
- 15:15-15:45:
- 1st group: Oncology, Christine Seidler
- 2nd group: BrainSUITE / IORS, Bryan McGuinn
- 15:45-16:00: Questions & Answers / Feedback, Andrea Miess
Literature
The primary literature is of great benefit as preparation for the exam. The secondary literature can be consulted to gain a deeper insight into particular topics.
Primary Literature
- Overview
- Modalities
- Computed Tomography
- Magnetic Resonance Tomography
- Image Processing / (Filtering, Morpholgical Operations, and Basic Segmentation Methods):
- Segmentation:
- [Pham2000] Dzung L. Pham, Chenyang Xu, and Jerry L. Prince. Current methods in medical image segmentation. Annual Review of Biomedical Engineering, 2:315-337, 2000. doi:10.1146/annurev.bioeng.2.1.315
- [MortensenLiveWire1992] E. Mortensen, B. Morse, W. Barrett, and J. Udupa: Adaptive Boundary Detection Using "Live-Wire" Two-Dimensional Dynamic Programming. Computers in Cardiology 1992. pp. 635-638. doi:10.1109/CIC.1992.269378
- [FalcaoLiveWire1998] A. X. Falcão et al.: User-Steered Image Segmentation Paradigms: Live Wire and Live Lane. Graphical Models and Image Processing 1998. Vol. 60, No. 4, pp. 233-260. doi:10.1006/gmip.1998.0475
- [Kass1988] M. Kass, A. Witkin, and D. Terzopoulos. Snakes: Active contour models. International Journal of Computer Vision. Vol. 1, No. 4, pp. 321-331. 1988. doi:10.1007/BF00133570
- [SethianLevelSetFastMarching] J. A. Sethian: Level Set Methods and Fast Marching Methods. Evolving Interfaces in Computational Geometry, Fluid Mechanics, Computer Vision, and Materials Science. Cambridge University Press
- Registration:
- [Maintz1998] Maintz, J.B.A. & Viergever, M.A. A survey of medical image registration Medical Image Analysis, 1998, 2, 1-36
- [Hajnal2001] J. V. Hajnal, D. L. G. Hill, and D. J. Hawkes: Medical Image Registration. CRC Press, Biomedical Engineering Series, 2001
- Computer Vision:
- Computer Aided Surgery:
- [Grimson1999] W. Eric L. Grimson, Ron Kikinis, Ferenc A. Jolesz, and Peter McL. Black: Image-Guided Surgery. Scientific American, 280(6) pp. 62-69, 1999
Secondary Literature