Intra-operative Imaging & Visualization

by Nassir Navab & invited guests

3 SWS
Praktische Informatik
Vertiefung
4 ECTS

Preliminary discussion for the exam: July 07, 2005 2:15-2:30
Exam: Tuesday, July 19, 2005 2:00-3:30 (room to be announced)

Time & Location

• Tuesday 2:00-2:45pm, MI 00.13.009A
• Thursday 2:15-3:45pm, MI 00.04.011 (HS 2)
• Exam: Tuesday, July 19, 2005 10:00-11:30 (03.13.010)

Abstract

Computer Science is playing an important, increasing role in medical practices. Medical imaging companies are no more asked by physicians to only produce images of anatomy. Instead, they are asked to design software and hardware systems to provide complex computer-aided solutions for diagnosis, intervention and therapy. There are more and more opportunities for computer science graduates to contribute to development and deployment of medical solutions.

Within the operating rooms, there is an increasing need for the integration and visualization of heterogeneous data acquired by numerous sensors. This course on Intra-operative imaging and visualization exposes the students to the challenges of building the operating rooms of future. The main focus of the course is in imaging technologies especially intra-operative imaging as well as the visualization of this data.

There will be invited guests for the hospital Rechts der Isar in the Thursday class. They will talk about the physical properties and the clinical use of the different modalitries and techniques. The invited guests will be announced soon.

Course Schedule

Attention:
Old slides have been either removed or password protected. Please contact in order to get them.

Date	Content	Conducted by	Slides	Further Material
April 19, 2005	Introduction and Motivation for Intraoperative Imaging and Visualization	Prof. N. Navab	slides
April 21, 2005	History of Radiology: From X-ray to Medical Augmented Reality	Prof. N. Navab	slides
April 26, 2005	Exemplary Applications for Computer Aided Surgery	Joerg Traub & Prof. N. Navab	slides
April 28, 2005	Physical Properties of Radiation with Applications in X-ray & Radiation Therapy	Prof. P. Kneschaurek (Klinik und Poliklinik für Strahlentherapie und Radiologische Onkologie, Klinikum rechts der Isar)	slides
May 03, 2005	Basics of 3D Computer Vision: Camera and Projections	Prof. N. Navab	slides	MATLAB_Workshop.pdf Exercises.pdf bg-mri.jpg transformImage.m solutionFiles.zip
May 10, 2005	Basics of 3D Computer Vision: Calibration, Estimation & Tracking	Tobias Sielhorst & Prof. N. Navab	slides (Transformations in 3D) slides (Rotations and Quaternions)
May 12, 2005	Role of Medical Images for Diagnosis	Dr. M. Dobritz (Institut für Röntgendiagnostik, Klinikum rechts der Isar)	slides	the slides have a size of 35MB
May 19, 2005	Mathematical Basics of Computer Tomography Reconstruction	Prof. Dr. R. Lasser (Institute of Biomathematics and Biometry, GSF & Department of Mathematics, TUM)	script
May 24, 2005	Field Trip to BrainLAB
May 31, 2005	Medical Image Registration I	Wolfgang Wein & Prof. N. Navab	slides
June 02, 2005	Basics of Magnetic Resonance Imaging	Dr. S. Nekolla (Nuklearmedizin Rechts der Isar)	slides
June 07, 2005	Medical Image Registration II	Wolfgang Wein & Prof. N. Navab
June 09, 2005	Basics of Ultrasound Imaging and 4D Ultrasound	M. Schreckenberg (TomTec Imaging Systems GmbH)	slides
June 14, 2005	Medical Image Registration III	Wolfgang Wein & Prof. N. Navab	slides
June 16, 2005	Basics of Nuclear Medicine (PET, SPECT, and Introperative Probes)	Dr. S. Ziegler (Nuklearmedizin Rechts der Isar)
June 21, 2005	Medical Image Registration IV	Wolfgang Wein & Prof. N. Navab	slides
June 23, 2005	Siemens Medical Field Trip
June 28, 2005	Medical Image Segmentation Overview I	Andreas Keil & Prof. Dr. Nassir Navab
June 30, 2005	Cone-Beam Reconstruction	Dr. G. Lauritsch (Siemens AG, Medical Solutions, AX)	slides
July 05, 2005	Medical Image Segmentation Overview II	Andreas Keil & Prof. Dr. Nassir Navab	slides
July 07, 2005	Advanced In-situ Visualization	Tobias Sielhorst & Prof. Dr. Nassir Navab	slides
July 12, 2005	Navigation and Tracking	Joerg Traub & Prof. N. Navab	slides
July 14, 2005	Conclusion	Prof. N. Navab

Field Trips

BrainLAB Tuesday, May 24, 2005

There will be a half day field trip to BrainLAB on May 24. The presentations will start at 2pm at BrainLAB. Meeting point will be either 1:15 in front of the library in the MI faculty building of TUM in Garching or directly 1:55 at BrainLAB at the entrace. If you have further questions contact Joerg Traub.

Siemens Medical Field Trip, June 23, 2005

There was a one day field trip to Siemens Medical on June 23. In order to further improve this trip as well as the lecture, we would be greatful if all the participants would fill in this short questionnaire about the trip. If you have further questions contact Andreas Keil.

Literature

• [CARS] Various Proceedings of CARS (Computer Assisted Radiology and Surgery - International Congress and Exhibition)
• [CAS] Various Volumes of Computer Aided Surgery
• [Grimson1999] W. Eric L. Grimson, Ron Kikinis, Ferenc A. Jolesz, Peter McL. Black, Image-Guided Surgery, Scientific American, 280(6) pp.62-69. 1999
• [Hanjnal2001] J. V. Hajnal, D. L.G. Hill, D. J. Hawkes, Medical Image Registration ,CRC Press, Biomedical Engineering Series. 2001
• [Hardley2004] Richard Hartley, Andrew Zisserman, Multiple View Geometry in Computer Vision, Cambridge University Press, 2nd edition. 2004
• [Kak2001] Avinash C. Kak, Malcolm Slaney, Principles of Computerized Tomographic Imaging, SIAM Society for Industrial & Applied Mathematics. 2001 (online version)
• [MICCAI] Various Proceedings of MICCAI (International Society and Conference Series on Medical Image Computing and Computer-Assisted Intervention)
• [Mueller1998] K. Mueller, Fast and accurate three-dimensional reconstruction from cone-beam projection data using algebraic methods, PhD dissertation, The Ohio State University, June, 1998
• [Peters2000] Terry M. Peters, Image-guided surgery: From X-rays to Virtual Reality, Comput Methods Biomech Biomed Engin. 2000;4(1):27-57
• [TMI] Various IEEE Transactions on Medical Imaging
• [Natter1986] F. Natterer, The Mathematics of Computerized Tomography, John Wiley and Sons Ltd. 1986